This paper presents a magnetic motive force (MMF) control scheme for an integrated magnetic-based inverter. The inverter scheme uses two input inverters fed by a common DC link while operating at different frequencies. By controlling the MMF of the magnetic arms, the power regulation is achieved. The bond graph model facilitates multi-domain modelling of the system; therefore, the plant model is derived using bond graph. Further, the overall plant is modelled in the frequency domain. Using the plant model, for decoupled active and reactive power control, the controllers are designed in the synchronous reference frame. Simulation studies are done using the permeance-based magnetic model and co-simulation of MATLAB-PLECS. The advantage of using two inverters with magnetic is a reduced DC link, elimination of higher order filter and isolation. Finally, the simulation result validated the system’s performance. In the final version of the manuscript, hardware results will also be included.